Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5290

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5289: 13657 - K00344 qor, CRYZ NADPH2-quinone reductase, at 363937 to 365504 13657 mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365926 to 369880 13658 mRNA_5291: 13659 - K00799 GST, gst glutathione S-transferase, at 370278 to 371436 13659

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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364,965 - 13657 mRNA_5289 0.66 0.3
365,130 + 13657 mRNA_5289 0.76 0.2
365,141 - 13657 mRNA_5289 0.77 1.0
365,286 - 13657 mRNA_5289 0.86 0.2
365,368 - -0.2
365,385 + -0.3
365,404 - 0.2
365,474 - -0.3
365,710 - 1.0
365,714 + 0.6
365,733 + -0.7
365,865 + 0.2
365,890 - 0.6
365,936 - -0.1
365,976 + 0.0
366,004 + 0.3
366,146 - 0.5
366,151 + 1.6
366,159 - 0.1
366,168 + 1.8
366,172 + 0.5
366,351 + 13658 mRNA_5290 0.11 0.8
366,989 + 13658 mRNA_5290 0.27 0.7
367,083 + 13658 mRNA_5290 0.29 -0.2
367,154 - 13658 mRNA_5290 0.31 0.2
367,251 + 13658 mRNA_5290 0.34 -0.8
367,326 + 13658 mRNA_5290 0.35 0.1
367,681 - 13658 mRNA_5290 0.44 -0.0
367,719 + 13658 mRNA_5290 0.45 1.0
367,728 + 13658 mRNA_5290 0.46 0.2
367,818 + 13658 mRNA_5290 0.48 0.9
368,441 + 13658 mRNA_5290 0.64 1.0
368,600 + 13658 mRNA_5290 0.68 0.3
368,997 + 13658 mRNA_5290 0.78 1.7
369,132 - 13658 mRNA_5290 0.81 0.1
369,165 + 13658 mRNA_5290 0.82 -0.5
369,547 - -0.1
369,581 - 1.2
369,591 + 1.0
369,694 - -0.2
369,730 + 1.4
369,743 - 0.7
369,743 + -0.3
369,873 + 1.0
369,885 - 0.2
369,900 + 0.3
369,902 - 1.1
370,012 - 0.1
370,020 - 0.6
370,020 - 0.1
370,021 - 0.3
370,033 + 0.0
370,036 + 0.1
370,039 - 0.4
370,039 - 0.6
370,043 + -0.1
370,070 - 0.0
370,091 - 0.1
370,095 + 1.3
370,097 + 0.3
370,202 + -0.6
370,489 - 13659 mRNA_5291 0.18 -0.9
370,521 + 13659 mRNA_5291 0.21 0.2
370,738 - 13659 mRNA_5291 0.40 0.4
370,786 - 13659 mRNA_5291 0.44 -0.5