Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5278

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5277: 13645 - Hypothetical Protein, at 340398 to 341217 13645 mRNA_5278: 13646 - KOG1488 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily), at 341492 to 344533 13646 mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344945 to 347664 13647

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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340,564 - 13645 mRNA_5277 0.20 0.4
340,675 - 13645 mRNA_5277 0.34 0.2
340,723 - 13645 mRNA_5277 0.40 0.0
341,050 - 13645 mRNA_5277 0.80 0.9
341,117 + 13645 mRNA_5277 0.88 0.5
341,592 - 1.4
341,682 + -2.0
341,972 + 13646 mRNA_5278 0.16 0.9
342,449 - 13646 mRNA_5278 0.31 0.4
342,760 - 13646 mRNA_5278 0.42 1.4
342,902 - 13646 mRNA_5278 0.46 0.6
343,048 - 13646 mRNA_5278 0.51 -0.1
343,459 + 13646 mRNA_5278 0.65 -0.3
343,803 - 13646 mRNA_5278 0.76 1.6
343,937 + 13646 mRNA_5278 0.80 0.6
344,625 - 0.0
345,398 + 13647 mRNA_5279 0.17 -0.0
345,402 + 13647 mRNA_5279 0.17 0.4
345,512 + 13647 mRNA_5279 0.21 0.4
345,521 - 13647 mRNA_5279 0.21 0.1