Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5275

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5274: 13642 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 334553 to 337184 13642 mRNA_5275: 13643 - K06688 UBE2C, UBC11 ubiquitin-conjugating enzyme E2 C, at 337519 to 338338 13643 mRNA_5276: 13644 - Hypothetical Protein, at 339259 to 340241 13644

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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336,769 - 13642 mRNA_5274 0.84 1.7
336,917 - 13642 mRNA_5274 0.90 0.5
337,037 + 0.3
337,091 - -0.2
337,101 + 0.1
337,249 + 0.4
337,249 - 0.9
337,252 + 0.4
337,362 + 0.2
337,362 + 2.1
337,365 - -0.5
337,371 - 0.1
337,385 + 0.1
337,496 + 0.6
337,532 + -1.0
337,871 + 13643 mRNA_5275 0.43 0.1
337,979 - 13643 mRNA_5275 0.56 -0.6
338,097 - 13643 mRNA_5275 0.70 -0.2
338,106 - 13643 mRNA_5275 0.72 1.2
338,149 + 13643 mRNA_5275 0.77 0.9
338,243 + 13643 mRNA_5275 0.88 0.1
338,260 + 0.6
338,265 - 0.1
338,294 - -0.4
338,391 + -0.0
338,417 + 1.0
338,552 - 0.1
338,649 + -0.4
338,693 + 1.6
338,709 + 0.4
338,733 - -0.1
338,792 + 0.2
338,795 + 1.1
338,849 + 0.8
338,853 - 0.7
338,946 - 1.3
338,987 - -0.3
338,994 + 1.0
338,998 - 0.5
339,006 + -0.6
339,276 - 0.9
339,293 - -0.0