Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5225

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5224: 13592 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 190897 to 192363 13592 mRNA_5225: 13593 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 192628 to 196368 13593 mRNA_5226: 13594 - K12472 EPS15 epidermal growth factor receptor substrate 15, at 196713 to 201520 13594

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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191,639 - 13592 mRNA_5224 0.51 1.1
191,666 + 13592 mRNA_5224 0.52 0.2
191,695 + 13592 mRNA_5224 0.54 -0.8
191,823 + 13592 mRNA_5224 0.63 -0.1
191,827 - 13592 mRNA_5224 0.63 0.4
191,981 - 13592 mRNA_5224 0.74 -0.1
191,992 + 13592 mRNA_5224 0.75 0.2
192,170 + 13592 mRNA_5224 0.87 0.7
192,188 + 13592 mRNA_5224 0.88 0.2
192,191 + 13592 mRNA_5224 0.88 0.1
192,194 + 13592 mRNA_5224 0.88 1.2
192,200 - 13592 mRNA_5224 0.89 -0.5
192,255 + 1.2
192,276 - 1.6
192,289 - 1.6
192,290 + 0.0
192,416 - -0.7
192,423 - -0.7
192,433 - 0.9
192,435 + 0.4
192,439 - 0.5
192,500 + 0.6
192,609 - 0.6
192,714 + -0.3
192,763 - 0.6
192,876 + -1.0
193,022 + 13593 mRNA_5225 0.11 -0.1
193,032 - 13593 mRNA_5225 0.11 -0.7
193,053 + 13593 mRNA_5225 0.11 0.8
193,193 + 13593 mRNA_5225 0.15 -0.5
193,281 - 13593 mRNA_5225 0.17 1.4
193,295 - 13593 mRNA_5225 0.18 -0.4
193,396 + 13593 mRNA_5225 0.21 0.4
193,648 + 13593 mRNA_5225 0.27 0.1
193,724 + 13593 mRNA_5225 0.29 -0.1
194,037 + 13593 mRNA_5225 0.38 1.7
194,083 + 13593 mRNA_5225 0.39 0.6
194,085 - 13593 mRNA_5225 0.39 1.2
194,231 - 13593 mRNA_5225 0.43 1.0
194,266 + 13593 mRNA_5225 0.44 -0.8
194,359 - 13593 mRNA_5225 0.46 2.4
194,536 + 13593 mRNA_5225 0.51 0.4
194,596 - 13593 mRNA_5225 0.53 0.5
194,647 - 13593 mRNA_5225 0.54 -1.5
194,652 + 13593 mRNA_5225 0.54 0.2
194,671 - 13593 mRNA_5225 0.55 1.2
194,677 + 13593 mRNA_5225 0.55 -0.2
194,760 + 13593 mRNA_5225 0.57 -1.0
194,905 - 13593 mRNA_5225 0.61 0.5
194,915 + 13593 mRNA_5225 0.61 0.5
195,068 + 13593 mRNA_5225 0.65 -1.1
195,098 - 13593 mRNA_5225 0.66 -0.7
195,228 + 13593 mRNA_5225 0.70 0.6
195,323 - 13593 mRNA_5225 0.72 0.8
195,362 - 13593 mRNA_5225 0.73 -0.6
195,474 - 13593 mRNA_5225 0.76 2.2
195,477 + 13593 mRNA_5225 0.76 -0.7
195,629 + 13593 mRNA_5225 0.80 0.0
195,639 + 13593 mRNA_5225 0.80 1.7
195,841 + 13593 mRNA_5225 0.86 0.4
195,844 - 13593 mRNA_5225 0.86 0.9
195,871 + 13593 mRNA_5225 0.87 0.2
195,939 + 13593 mRNA_5225 0.89 -0.1
196,229 - 1.3
196,229 - 1.0
196,568 - 0.8
196,726 - 0.7
196,737 + 0.8
196,746 + 0.8
196,860 + 1.2
196,993 - 0.4
197,000 + 0.5
197,011 - 0.1
197,013 - 0.1
197,143 - 1.0
197,281 + 13594 mRNA_5226 0.12 0.4