Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5218

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5216: 13584 - K04648 DCTN1 dynactin 1, at 169213 to 174465 13584 mRNA_5218: 13586 - HMMPfam-RNA12 protein-PF10443,SUPERFAMILY--SSF52540,SUPERFAMILY--SSF54928, at 174597 to 177713 13586 mRNA_5219: 13587 - Hypothetical Protein, at 177901 to 180149 13587

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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174,502 + 0.8
174,503 - 0.7
174,517 + -0.1
174,560 - 0.7
174,565 + 1.5
174,566 + 0.7
174,577 + 0.1
174,601 - 1.7
174,700 + 0.8
174,734 - -1.8
175,148 - 13586 mRNA_5218 0.18 -0.2
175,286 + 13586 mRNA_5218 0.22 0.5
175,593 - 13586 mRNA_5218 0.32 1.3
175,593 + 13586 mRNA_5218 0.32 0.9
176,005 - 13586 mRNA_5218 0.45 0.4
176,294 + 13586 mRNA_5218 0.54 -0.4
176,410 - 13586 mRNA_5218 0.58 1.0
176,507 + 13586 mRNA_5218 0.61 0.8
176,754 - 13586 mRNA_5218 0.69 1.5
177,168 - 13586 mRNA_5218 0.82 1.1
177,366 + 13586 mRNA_5218 0.89 1.3
177,462 + 0.1
177,502 + 1.0
177,521 + 1.5
177,563 - 0.5
177,578 + 1.7
177,603 + 1.6
177,609 - 0.1
177,615 - 1.0
177,728 + -0.1
177,737 - -0.9
177,747 + 0.4
177,750 - -0.1
177,760 + -0.2
177,766 - -0.6
177,775 - 0.5
177,785 - 0.2
177,818 - -0.0
177,840 + -0.3
177,860 + 0.5
177,864 - 0.7
177,978 - 0.5
177,986 + 0.6
178,001 + -0.2
178,071 - 0.6
178,112 - -0.4
178,124 - -0.2
178,132 + 13587 mRNA_5219 0.10 0.2
178,244 - 13587 mRNA_5219 0.15 0.6
178,307 - 13587 mRNA_5219 0.18 0.5
178,408 + 13587 mRNA_5219 0.23 0.3
178,422 + 13587 mRNA_5219 0.23 0.2
178,439 - 13587 mRNA_5219 0.24 0.8
178,567 - 13587 mRNA_5219 0.30 0.9