Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5195

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122774 to 124635 13562 mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125333 to 126456 13563 mRNA_5196: 13564 - K17218 sqr sulfide-quinone oxidoreductase, at 126891 to 128997 13564

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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124,511 - -0.0
124,556 - 0.6
124,583 - 0.6
124,586 - -0.1
124,591 - 0.3
124,616 + -0.5
124,624 - -0.9
124,645 + 0.6
124,732 - 1.5
124,773 + 0.5
124,775 + 0.6
124,775 + 0.1
124,776 - 1.0
124,781 + -0.6
124,784 - 1.1
124,788 + 0.7
124,798 + 0.0
124,798 + -0.4
124,801 - -1.1
124,803 + 0.5
124,805 - 2.4
124,807 + 0.7
124,812 + 0.4
124,896 + -0.0
124,927 + 0.6
124,941 - 0.3
124,961 - 0.7
124,963 + 0.2
124,968 - 0.3
124,968 + 1.4
124,968 + 0.9
124,970 - 0.3
124,972 + 0.2
124,975 + 0.3
124,983 + 0.6
124,984 + -0.1
125,005 - 0.1
125,016 + 0.1
125,040 - 0.7
125,043 - 0.6
125,050 + 0.3
125,223 + 0.1
125,227 + 0.8
125,665 + 13563 mRNA_5195 0.30 -1.0
125,668 + 13563 mRNA_5195 0.30 -0.3
125,816 - 13563 mRNA_5195 0.43 -0.9
125,816 + 13563 mRNA_5195 0.43 0.1
125,957 - 13563 mRNA_5195 0.56 0.6
126,343 + 13563 mRNA_5195 0.90 0.5
126,364 + 0.4
126,411 - -0.2
126,498 - 0.4
126,511 + 0.6
126,518 - -0.6
126,524 - 1.0
126,532 + 1.6
126,540 + 0.1
126,540 + 0.2
126,668 + 0.8
126,684 - 0.9
126,695 + 0.6
126,697 + 0.1
126,704 + -0.1
126,711 - -0.1
126,810 - -0.1
126,816 - -0.7
126,817 + 1.3
126,839 + 0.6
126,924 + 0.4
127,006 + 0.5
127,171 + 13564 mRNA_5196 0.13 1.4
127,303 + 13564 mRNA_5196 0.20 0.0
127,305 - 13564 mRNA_5196 0.20 1.0
127,430 + 13564 mRNA_5196 0.26 1.6
127,443 + 13564 mRNA_5196 0.26 -0.7
127,443 - 13564 mRNA_5196 0.26 0.2