Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5192

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5191: 13559 - KOG4826 C-8,7 sterol isomerase, at 116613 to 117622 13559 mRNA_5192: 13560 - KOG2814 Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family), at 117744 to 118664 13560 mRNA_5193: 13561 - KOG0253 Synaptic vesicle transporter SV2 (major facilitator superfamily), at 119123 to 121882 13561

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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116,814 + 13559 mRNA_5191 0.20 -0.1
116,933 - 13559 mRNA_5191 0.32 0.1
116,985 - 13559 mRNA_5191 0.37 -0.4
117,106 + 13559 mRNA_5191 0.49 0.3
117,132 - 13559 mRNA_5191 0.51 -0.9
117,279 + 13559 mRNA_5191 0.66 0.2
117,688 - -0.0
117,707 - -0.2
117,709 - -0.1
117,858 - 13560 mRNA_5192 0.12 1.3
117,859 + 13560 mRNA_5192 0.12 1.5
118,165 + 13560 mRNA_5192 0.46 1.0
118,169 + 13560 mRNA_5192 0.46 0.6
118,730 + -0.9
118,734 - 0.2