Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5138

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5137: 13505 - K13342 PEX5, PXR1 peroxin-5, at 1840835 to 1843889 13505 mRNA_5138: 13506 - K20359 RABAC1, PRAF1 PRA1 family protein 1, at 1844038 to 1845081 13506 mRNA_5139: 13507 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 1845271 to 1846302 13507

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,843,097 - 13505 mRNA_5137 0.74 0.3
1,843,238 + 13505 mRNA_5137 0.79 -0.5
1,843,372 + 13505 mRNA_5137 0.83 0.8
1,843,385 + 13505 mRNA_5137 0.83 -0.7
1,843,553 + 13505 mRNA_5137 0.89 -0.2
1,843,664 + 0.7
1,843,793 - -0.9
1,843,810 + -0.3
1,843,942 - -0.5
1,843,951 - 0.2
1,843,957 - 0.4
1,843,979 - 2.0
1,843,981 - 1.2
1,843,982 + 0.4
1,843,982 - 0.2
1,843,995 - 1.1
1,843,996 + -0.1
1,844,120 + 0.3
1,844,411 + 13506 mRNA_5138 0.36 1.1
1,844,668 - 13506 mRNA_5138 0.60 0.5
1,844,730 - 13506 mRNA_5138 0.66 1.1
1,844,861 + 13506 mRNA_5138 0.79 1.8
1,844,987 - -0.3
1,845,040 + 0.3
1,845,172 + -0.2
1,845,414 + 13507 mRNA_5139 0.14 0.4
1,845,416 + 13507 mRNA_5139 0.14 0.3
1,845,746 - 13507 mRNA_5139 0.46 -0.3
1,846,024 - 13507 mRNA_5139 0.73 0.0