Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5068

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5067: 13435 - Hypothetical Protein, at 1671093 to 1672541 13435 mRNA_5068: 13436 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1673018 to 1675437 13436 mRNA_5069: 13437 - KOG2317 Putative translation initiation inhibitor UK114/IBM1, at 1676038 to 1676601 13437

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,672,110 - 13435 mRNA_5067 0.70 -0.3
1,672,427 + 0.4
1,672,703 + 0.1
1,672,726 - 0.7
1,672,731 - 1.5
1,672,733 + -1.4
1,672,736 - 0.3
1,672,750 - -0.4
1,672,754 - 0.3
1,672,924 + 0.2
1,672,962 + 0.5
1,673,171 + -0.9
1,673,173 + 2.0
1,673,177 - 1.1
1,673,183 + -0.7
1,673,493 - 13436 mRNA_5068 0.20 1.9
1,673,618 - 13436 mRNA_5068 0.25 1.1
1,673,762 + 13436 mRNA_5068 0.31 0.6
1,674,077 - 13436 mRNA_5068 0.44 0.8
1,674,235 - 13436 mRNA_5068 0.50 0.3
1,674,236 + 13436 mRNA_5068 0.50 0.6
1,674,481 + 13436 mRNA_5068 0.60 1.1
1,674,788 - 13436 mRNA_5068 0.73 0.2
1,674,924 - 13436 mRNA_5068 0.79 0.1
1,674,924 + 13436 mRNA_5068 0.79 -0.3
1,675,190 - 13436 mRNA_5068 0.90 -0.1
1,675,206 + -0.1
1,675,224 + 1.2
1,675,367 - 0.4
1,675,492 + 0.5
1,675,644 + 0.4
1,675,657 + -0.5
1,675,661 + 0.3
1,675,670 + 0.2
1,675,671 + 0.3
1,675,673 + -0.7
1,675,677 - -0.3
1,675,684 - -1.0
1,675,804 + -0.5
1,675,950 - -0.0
1,675,972 + -0.6
1,675,979 - 0.2
1,676,393 + 13437 mRNA_5069 0.63 0.5
1,676,395 - 13437 mRNA_5069 0.63 0.1