Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5067

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5066: 13434 - KOG3170 Conserved phosducin-like protein, at 1669244 to 1670342 13434 mRNA_5067: 13435 - Hypothetical Protein, at 1671093 to 1672541 13435 mRNA_5068: 13436 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1673018 to 1675437 13436

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,670,201 - 13434 mRNA_5066 0.87 0.2
1,670,356 + 0.8
1,670,356 - 0.5
1,670,358 - -0.1
1,670,367 + 0.4
1,670,367 + 0.9
1,670,382 - -0.2
1,670,497 + -0.3
1,670,500 + 1.3
1,670,518 - 1.8
1,670,610 - 0.1
1,670,611 - 0.0
1,670,624 - 1.1
1,670,689 + 2.0
1,670,690 - 0.3
1,670,745 + -0.7
1,670,795 - 0.6
1,670,795 - 0.8
1,670,796 + -0.4
1,670,800 + 0.7
1,670,805 + 0.5
1,670,807 + 0.2
1,670,807 + -0.4
1,670,819 + 0.2
1,670,823 - 0.4
1,670,828 + 0.7
1,670,832 - 1.4
1,670,841 - 0.2
1,670,854 + 0.3
1,670,955 - -1.0
1,670,959 + 0.2
1,670,964 - -0.0
1,670,968 - 0.3
1,670,971 - -0.3
1,670,979 + 0.4
1,670,988 + 0.7
1,670,996 - -0.2
1,671,096 - -0.6
1,671,111 - 0.7
1,671,125 + 0.7
1,671,396 - 13435 mRNA_5067 0.21 1.0
1,671,526 - 13435 mRNA_5067 0.30 -0.3
1,671,821 + 13435 mRNA_5067 0.50 0.1
1,671,998 - 13435 mRNA_5067 0.62 -0.5
1,672,110 - 13435 mRNA_5067 0.70 -0.3
1,672,427 + 0.4
1,672,703 + 0.1
1,672,726 - 0.7
1,672,731 - 1.5
1,672,733 + -1.4
1,672,736 - 0.3
1,672,750 - -0.4
1,672,754 - 0.3
1,672,924 + 0.2
1,672,962 + 0.5
1,673,171 + -0.9
1,673,173 + 2.0
1,673,177 - 1.1
1,673,183 + -0.7
1,673,493 - 13436 mRNA_5068 0.20 1.9