Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5060

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5059: 13427 - KOG0022 Alcohol dehydrogenase, class III, at 1652748 to 1654435 13427 mRNA_5060: 13428 - HMMPfam-Glycosyl transferase family 2-PF00535,HMMPfam-Glycosyl transferase family 8-PF01501,HMMPfam-Glycosyl transferase 4-like domain-PF13579,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF53756, at 1654681 to 1660965 13428 mRNA_5061: 13429 - K11414 SIRT4, SIR2L4 NAD-dependent deacetylase sirtuin 4, at 1661158 to 1662498 13429

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,653,885 + 13427 mRNA_5059 0.67 0.9
1,654,177 - 13427 mRNA_5059 0.85 1.6
1,654,345 - -0.3
1,654,614 + 0.9
1,654,644 - 0.3
1,654,661 - 0.5
1,654,837 - -0.3
1,655,059 + 2.4
1,655,174 + 0.5
1,655,632 + 13428 mRNA_5060 0.15 -0.3
1,655,836 - 13428 mRNA_5060 0.18 0.3
1,655,844 + 13428 mRNA_5060 0.19 -0.3
1,656,274 + 13428 mRNA_5060 0.25 -0.4
1,656,519 - 13428 mRNA_5060 0.29 1.5
1,657,247 + 13428 mRNA_5060 0.41 -0.2
1,657,292 + 13428 mRNA_5060 0.42 0.6
1,658,242 + 13428 mRNA_5060 0.57 0.8
1,658,273 + 13428 mRNA_5060 0.57 0.4
1,658,416 - 13428 mRNA_5060 0.59 -0.1
1,659,159 + 13428 mRNA_5060 0.71 -0.5
1,659,203 - 13428 mRNA_5060 0.72 -0.7
1,659,232 - 13428 mRNA_5060 0.72 -0.4
1,659,726 - 13428 mRNA_5060 0.80 -1.5
1,660,525 + 1.1
1,660,527 + 0.5
1,660,533 - 0.5
1,660,560 - -1.1
1,660,613 + 0.1
1,660,620 - -0.2
1,660,620 + 0.4
1,660,640 + 2.1
1,660,773 - 0.9
1,660,885 - 0.8
1,660,886 - -0.4
1,660,893 + -0.3
1,661,142 - 1.1
1,661,466 - 13429 mRNA_5061 0.23 2.1
1,661,475 - 13429 mRNA_5061 0.24 1.8
1,661,489 + 13429 mRNA_5061 0.25 0.0
1,661,516 - 13429 mRNA_5061 0.27 -0.5
1,661,611 - 13429 mRNA_5061 0.34 0.1
1,661,634 + 13429 mRNA_5061 0.35 0.2
1,661,817 - 13429 mRNA_5061 0.49 0.9
1,661,937 - 13429 mRNA_5061 0.58 0.1