Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5059

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5058: 13426 - K07249 E1.2.1.36 retinal dehydrogenase, at 1650225 to 1652548 13426 mRNA_5059: 13427 - KOG0022 Alcohol dehydrogenase, class III, at 1652748 to 1654435 13427 mRNA_5060: 13428 - HMMPfam-Glycosyl transferase family 2-PF00535,HMMPfam-Glycosyl transferase family 8-PF01501,HMMPfam-Glycosyl transferase 4-like domain-PF13579,SUPERFAMILY--SSF53448,SUPERFAMILY--SSF53756, at 1654681 to 1660965 13428

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,651,884 + 13426 mRNA_5058 0.71 -0.0
1,652,308 + 13426 mRNA_5058 0.90 0.5
1,652,448 - -0.4
1,652,461 + -0.4
1,652,461 + 0.1
1,652,605 + 0.6
1,652,610 + 0.0
1,652,615 - 0.4
1,652,616 + 0.6
1,652,620 - 0.6
1,652,630 - 0.5
1,652,630 - 1.0
1,652,632 + 2.0
1,652,633 + 0.9
1,652,636 + 0.5
1,652,636 - 1.1
1,652,674 + 0.7
1,652,715 - 1.1
1,652,732 + 1.3
1,652,770 - -0.1
1,653,005 + 13427 mRNA_5059 0.15 -0.3
1,653,007 - 13427 mRNA_5059 0.15 0.7
1,653,146 - 13427 mRNA_5059 0.24 1.1
1,653,190 + 13427 mRNA_5059 0.26 -0.5
1,653,337 + 13427 mRNA_5059 0.35 -0.7
1,653,604 - 13427 mRNA_5059 0.51 0.9
1,653,885 + 13427 mRNA_5059 0.67 0.9
1,654,177 - 13427 mRNA_5059 0.85 1.6
1,654,345 - -0.3
1,654,614 + 0.9
1,654,644 - 0.3
1,654,661 - 0.5
1,654,837 - -0.3
1,655,059 + 2.4
1,655,174 + 0.5