Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5032

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5031: 13399 - HMMPfam-PAS fold-PF00989,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-PAS repeat profile.-PS50112,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF55785, at 1595047 to 1597304 13399 mRNA_5032: 13400 - Hypothetical Protein, at 1597807 to 1600574 13400 mRNA_5033: 13401 - KOG4436 Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains), at 1601468 to 1605781 13401

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,597,323 - 0.8
1,597,410 - 0.5
1,597,413 + -0.3
1,597,440 + -0.5
1,597,442 + -0.3
1,597,512 - 2.4
1,597,520 - 0.4
1,597,524 - 0.7
1,597,542 - -0.5
1,597,555 + 1.1
1,597,559 - 0.9
1,597,563 - 0.4
1,597,564 + 0.3
1,597,573 - 0.2
1,597,599 - 0.4
1,597,639 - 0.6
1,598,013 + 0.6
1,598,284 - 13400 mRNA_5032 0.17 -0.7
1,599,634 - 13400 mRNA_5032 0.66 0.8
1,599,656 - 13400 mRNA_5032 0.67 1.0
1,599,774 + 13400 mRNA_5032 0.71 0.2
1,600,300 + -0.9
1,600,348 + -0.4
1,600,439 - -1.7
1,600,505 + 0.3
1,600,589 - -0.7
1,600,620 - 0.4
1,600,799 + 0.1
1,600,807 + 0.1
1,600,823 - 0.0
1,600,833 - 1.6
1,600,838 + 0.9
1,600,838 + 0.6
1,600,896 - 0.4
1,600,899 + 0.7
1,600,907 - -0.3
1,600,941 + -0.1
1,600,956 + 1.8
1,601,105 + 0.6
1,601,238 - -0.5
1,601,238 - 0.9
1,601,241 + -0.5
1,601,244 + 0.4