Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5003

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5002: 13370 - K02981 RP-S2e, RPS2 small subunit ribosomal protein S2e, at 1513605 to 1514626 13370 mRNA_5003: 13371 - Hypothetical Protein, at 1515241 to 1515824 13371 mRNA_5004: 13372 - K12848 SNU23 U4/U6.U5 tri-snRNP component SNU23, at 1516047 to 1517117 13372

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,514,800 - 0.9
1,514,811 + -0.1
1,514,829 + 0.6
1,514,941 - -0.5
1,514,958 - -0.4
1,514,959 + 0.8
1,514,988 - -1.3
1,514,988 - 0.2
1,515,124 + -0.4
1,515,125 + 0.4
1,515,149 - -0.4
1,515,156 - -0.0
1,515,173 + -0.1
1,515,175 + -0.2
1,515,175 - -0.3
1,515,181 + 0.5
1,515,182 + 1.0
1,515,205 - 1.0
1,515,206 - -0.6
1,515,267 + 0.4
1,515,306 + 13371 mRNA_5003 0.11 0.6
1,515,364 + 13371 mRNA_5003 0.21 1.0
1,515,530 - 13371 mRNA_5003 0.49 -0.8
1,515,553 - 13371 mRNA_5003 0.53 0.4
1,515,626 + 13371 mRNA_5003 0.66 1.0
1,515,626 + 13371 mRNA_5003 0.66 1.5
1,515,766 - -0.4
1,515,774 - 0.2
1,515,784 + -0.6
1,515,787 - 1.7
1,515,803 + 0.1
1,515,823 - -0.3
1,515,841 - -0.1
1,515,867 - 0.4
1,515,887 + 1.1
1,515,949 - -0.6
1,516,042 + 0.3
1,516,049 - -0.0