Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4997

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4996: 13364 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1499484 to 1500162 13364 mRNA_4997: 13365 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 1500389 to 1502919 13365 mRNA_4998: 13366 - KOG4169 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases, at 1503499 to 1504533 13366

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,499,443 - 0.2
1,499,467 - 0.8
1,499,475 + 1.8
1,500,181 - 0.1
1,500,189 - 1.4
1,500,194 + 1.1
1,500,198 - 0.3
1,500,207 + 0.4
1,500,209 + 0.6
1,500,211 + 0.3
1,500,212 - -0.3
1,500,214 - 1.3
1,500,220 - 0.5
1,500,229 + -0.8
1,500,354 + 0.1
1,500,371 + 0.0
1,500,490 + 0.6
1,500,635 - -0.6
1,500,659 + 13365 mRNA_4997 0.11 0.4
1,500,894 - 13365 mRNA_4997 0.20 0.7
1,501,211 + 13365 mRNA_4997 0.32 0.6
1,501,353 - 13365 mRNA_4997 0.38 0.4
1,501,665 - 13365 mRNA_4997 0.50 0.6
1,501,936 + 13365 mRNA_4997 0.61 0.5
1,501,939 + 13365 mRNA_4997 0.61 -0.3
1,502,248 - 13365 mRNA_4997 0.73 0.5
1,502,249 + 13365 mRNA_4997 0.73 0.7
1,502,395 + 13365 mRNA_4997 0.79 0.3
1,502,839 + 0.9
1,502,964 + 0.5
1,503,125 - 0.4
1,503,135 + 0.1
1,503,149 - 0.0
1,503,235 - 0.6
1,503,287 + 0.8
1,503,415 - 0.2
1,503,417 - 1.4
1,503,434 + 0.3
1,503,435 - 0.5
1,503,438 - 1.4
1,503,439 - -0.5
1,503,453 + 0.1
1,503,478 + 0.1
1,503,494 - 0.4
1,503,603 - 13366 mRNA_4998 0.10 0.9
1,503,621 - 13366 mRNA_4998 0.12 0.4
1,503,748 - 13366 mRNA_4998 0.24 0.4
1,503,751 + 13366 mRNA_4998 0.24 0.1
1,503,770 + 13366 mRNA_4998 0.26 -0.5
1,503,780 + 13366 mRNA_4998 0.27 0.2
1,503,858 - 13366 mRNA_4998 0.35 0.2