Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4959

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4958: 13326 - K02519 infB, MTIF2 translation initiation factor IF-2, at 1402816 to 1406002 13326 mRNA_4959: 13327 - K08269 ULK1_2_3, ATG1 serine/threonine-protein kinase ULK/ATG1, at 1406421 to 1410214 13327 mRNA_4960: 13328 - K00102 dld, LDHD D-lactate dehydrogenase (cytochrome), at 1410723 to 1413349 13328

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,406,432 - -0.6
1,407,115 + 13327 mRNA_4959 0.18 -1.6
1,407,115 + 13327 mRNA_4959 0.18 1.2
1,407,382 + 13327 mRNA_4959 0.25 1.3
1,407,717 + 13327 mRNA_4959 0.34 0.4
1,407,825 + 13327 mRNA_4959 0.37 -0.3
1,408,428 + 13327 mRNA_4959 0.53 -0.5
1,408,552 + 13327 mRNA_4959 0.56 -0.0
1,408,731 + 13327 mRNA_4959 0.61 -0.1
1,408,851 + 13327 mRNA_4959 0.64 0.2
1,409,167 - 13327 mRNA_4959 0.72 0.2
1,409,273 + 13327 mRNA_4959 0.75 1.1
1,409,394 - 13327 mRNA_4959 0.78 0.6
1,409,397 - 13327 mRNA_4959 0.78 -0.8
1,409,404 + 13327 mRNA_4959 0.79 0.4
1,409,498 - 13327 mRNA_4959 0.81 0.3
1,409,715 + 13327 mRNA_4959 0.87 -0.4
1,409,756 + 13327 mRNA_4959 0.88 -0.1
1,409,863 - -1.0
1,409,865 - 0.0
1,409,881 - -0.1
1,410,003 + 0.1
1,410,144 - 1.0
1,410,144 - 0.4
1,410,147 + 0.7
1,410,184 + 1.3
1,410,186 + 0.2
1,410,214 + 1.1
1,410,285 - 0.5
1,410,325 + 1.0
1,410,326 - -0.2
1,410,333 - 1.6
1,410,337 + -0.2
1,410,408 + -0.0
1,410,446 + 0.9
1,410,464 - 0.0
1,410,464 + 1.1
1,410,465 + 0.7
1,410,469 + 0.1
1,410,472 - 1.7
1,410,508 + -0.7
1,410,627 - 0.2
1,410,635 + 0.7
1,410,642 - 0.0
1,410,782 - 1.5
1,410,790 + 0.1
1,410,795 + 0.6
1,410,902 - -0.1
1,410,906 + -0.1
1,410,917 + -0.4
1,410,918 + 0.6
1,411,048 - 13328 mRNA_4960 0.12 0.7