Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4929

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4928: 13296 - HMMPfam-Transient receptor potential (TRP) ion channel-PF06011,HMMPfam-ML-like domain-PF14558, at 1337111 to 1340226 13296 mRNA_4929: 13297 - K01956 carA, CPA1 carbamoyl-phosphate synthase small subunit, at 1340791 to 1342395 13297 mRNA_4930: 13298 - HMMPfam-Ubiquitin family-PF00240,HMMPfam-BAG domain-PF02179,ProSiteProfiles-Ubiquitin domain profile.-PS50053,ProSiteProfiles-BAG domain profile.-PS51035,SMART-BAG domains, present in regulator of Hsp70 proteins-SM00264,SUPERFAMILY--SSF54236,SUPERFAMILY--SSF63491, at 1342722 to 1344500 13298

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,340,268 + -0.5
1,340,289 - 1.4
1,340,301 + 1.1
1,340,322 - -0.3
1,340,333 - 0.4
1,340,340 + 0.3
1,340,341 - 0.3
1,340,342 + 0.0
1,340,361 + 0.6
1,340,479 + 0.2
1,340,482 + -0.3
1,340,486 + 0.4
1,340,492 + 0.4
1,340,493 - 1.1
1,340,516 - 1.1
1,340,520 + 0.1
1,340,547 - 0.6
1,340,628 - 0.5
1,340,662 + 1.7
1,340,987 + 13297 mRNA_4929 0.12 0.7
1,341,206 + 13297 mRNA_4929 0.26 -0.1
1,341,668 + 13297 mRNA_4929 0.55 0.4
1,341,673 + 13297 mRNA_4929 0.55 -0.7
1,341,675 - 13297 mRNA_4929 0.55 -0.7
1,341,922 - 13297 mRNA_4929 0.70 0.2
1,341,926 + 13297 mRNA_4929 0.71 -0.1
1,342,181 + 13297 mRNA_4929 0.87 0.4
1,342,247 + 0.5
1,342,359 - -1.1
1,342,492 - 0.3
1,342,494 - -0.1
1,342,494 - 0.0
1,342,498 - 0.7
1,342,511 + 1.6
1,342,624 + 0.6
1,342,651 - 0.5
1,342,655 + 0.1
1,342,662 - 0.8
1,342,663 - 0.1
1,342,663 + 0.8
1,342,673 - 0.4
1,342,677 + 1.1
1,342,680 + 1.2
1,342,708 + 0.2
1,342,774 + -0.0
1,342,797 - 0.6
1,342,799 - -0.4
1,342,801 - 2.0
1,342,804 + -1.1
1,342,807 + -0.7
1,342,810 - -0.0
1,342,817 + 0.0
1,342,820 - 0.1
1,342,824 + 0.5
1,342,825 + 1.3
1,342,826 - 0.6
1,342,836 - 0.4
1,342,862 + 0.3
1,343,004 - 13298 mRNA_4930 0.16 0.9
1,343,147 + 13298 mRNA_4930 0.24 0.3
1,343,153 + 13298 mRNA_4930 0.24 0.2
1,343,262 - 13298 mRNA_4930 0.30 -0.2
1,343,262 - 13298 mRNA_4930 0.30 0.7
1,343,285 - 13298 mRNA_4930 0.32 0.4
1,343,296 - 13298 mRNA_4930 0.32 0.4