Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4877

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4876: 13244 - K20133 USP6NL USP6 N-terminal-like protein, at 1198224 to 1200676 13244 mRNA_4877: 13245 - KOG2533 Permease of the major facilitator superfamily, at 1201220 to 1203456 13245

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,200,285 + 13244 mRNA_4876 0.84 -0.0
1,200,420 - 13244 mRNA_4876 0.90 0.1
1,200,546 + 0.6
1,200,554 + 0.2
1,200,566 + -1.2
1,200,716 - 0.5
1,200,873 - 0.3
1,201,006 + -0.3
1,201,010 + 0.3
1,201,204 + 1.2
1,202,182 + 13245 mRNA_4877 0.43 0.1
1,202,205 + 13245 mRNA_4877 0.44 0.3
1,202,918 + 13245 mRNA_4877 0.76 0.9
1,203,164 - 13245 mRNA_4877 0.87 -0.2
1,203,180 - 13245 mRNA_4877 0.88 1.8
1,203,489 + 0.5
1,203,548 + 0.4
1,203,639 + 1.7
1,203,772 - 0.8
1,203,784 + 1.5
1,203,795 - -0.8
1,203,797 + -0.4
1,203,798 + 0.5
1,203,809 + 1.0
1,203,810 - 0.4
1,203,821 + 0.5
1,203,821 + 1.2
1,203,842 + 0.2
1,203,842 + -0.1
1,203,846 + 1.5
1,203,847 - 0.2
1,203,848 - 0.3
1,203,849 + 0.9
1,203,860 + 2.0
1,203,863 - 0.6
1,203,864 - -0.1
1,203,869 + 0.2
1,203,870 + 0.4
1,203,875 + -0.1
1,203,892 + 0.2
1,203,893 - 2.0
1,203,899 + 1.0
1,203,915 - 0.5
1,203,919 + 1.1
1,203,938 + 0.5
1,203,943 - 0.3
1,203,949 + 0.2
1,203,949 + 0.5
1,203,952 + 0.0
1,203,956 - 1.0
1,203,956 + -0.3
1,203,983 + 0.1
1,203,996 + -0.0
1,204,001 + -0.1
1,204,084 + 0.1
1,204,110 - 0.7
1,204,134 - 0.2
1,204,323 - -0.0
1,204,328 - 0.1
1,204,336 - -0.5
1,204,352 + 2.1
1,204,397 + 0.8
1,204,427 - 0.3
1,204,435 + 1.0