Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4801

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4800: 13168 - HMMPfam-Glycosyl transferases group 1-PF00534,SUPERFAMILY--SSF53756, at 1042845 to 1046169 13168 mRNA_4801: 13169 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 1046260 to 1047966 13169 mRNA_4802: 13170 - K09313 CUTL homeobox protein cut-like, at 1048232 to 1051035 13170

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,045,307 + 13168 mRNA_4800 0.74 0.7
1,045,587 - 13168 mRNA_4800 0.82 0.2
1,045,646 + 13168 mRNA_4800 0.84 -0.2
1,045,881 + 0.4
1,045,895 + 1.0
1,046,015 - -1.5
1,046,143 + 0.2
1,046,170 + 0.3
1,046,297 - 0.4
1,046,299 - 0.3
1,047,022 - 13169 mRNA_4801 0.45 1.1
1,047,039 + 13169 mRNA_4801 0.46 0.7
1,047,739 + 13169 mRNA_4801 0.87 1.1
1,047,895 + 0.2
1,047,989 - 0.9
1,048,031 - -0.4
1,048,042 + 0.3
1,048,045 + 0.9
1,048,048 + -0.0
1,048,344 - 0.7
1,048,361 + -0.7
1,048,483 - -0.1
1,048,504 - 0.0
1,048,643 + 13170 mRNA_4802 0.15 0.5
1,048,794 + 13170 mRNA_4802 0.20 -0.3