Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4786

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4785: 13153 - KOG1577 Aldo/keto reductase family proteins, at 1009079 to 1010386 13153 mRNA_4786: 13154 - Hypothetical Protein, at 1011001 to 1011498 13154 mRNA_4787: 13155 - SUPERFAMILY--SSF49785, at 1011641 to 1014528 13155

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,010,019 - 13153 mRNA_4785 0.72 0.2
1,010,022 - 13153 mRNA_4785 0.72 0.2
1,010,309 - 0.9
1,010,315 - -0.4
1,010,464 - -0.0
1,010,609 - 0.4
1,010,712 - -0.1
1,010,733 - 0.4
1,010,744 - -0.9
1,010,745 - 1.6
1,010,745 + -1.2
1,010,749 - -0.4
1,010,751 - 0.1
1,010,759 + 0.1
1,010,759 - -1.0
1,010,759 - 1.3
1,010,759 - 0.1
1,010,762 + -0.1
1,010,763 + -0.2
1,010,764 + 1.1
1,010,764 + 0.8
1,010,785 - 1.1
1,010,796 - 0.7
1,010,798 - -0.9
1,010,804 + -0.0
1,010,806 - 0.9
1,010,853 + 0.5
1,010,872 - 1.0
1,010,873 - 0.6
1,010,880 - 0.4
1,010,886 + 0.7
1,010,887 + 0.4
1,010,892 + 1.2
1,010,898 - -0.1
1,010,912 + 0.3
1,010,913 + 0.3
1,010,914 - 2.0
1,010,919 + 0.4
1,010,927 + -0.1
1,010,929 - -0.1
1,010,943 + 0.2
1,010,950 + 0.4
1,010,974 - 1.5
1,010,976 + 0.3
1,010,979 - -0.3
1,010,983 + -1.1
1,010,986 - 0.7
1,010,990 - 0.0
1,011,002 - 0.5
1,011,003 - 0.2
1,011,003 + -0.6
1,011,004 - 0.4
1,011,005 - 1.4
1,011,012 - 0.2
1,011,061 + 13154 mRNA_4786 0.12 0.0
1,011,089 - 13154 mRNA_4786 0.18 1.8
1,011,130 - 13154 mRNA_4786 0.26 -0.5
1,011,134 + 13154 mRNA_4786 0.27 0.3
1,011,141 + 13154 mRNA_4786 0.28 0.2
1,011,161 + 13154 mRNA_4786 0.32 0.2
1,011,172 - 13154 mRNA_4786 0.34 -0.2
1,011,172 + 13154 mRNA_4786 0.34 -1.2
1,011,175 - 13154 mRNA_4786 0.35 -0.6
1,011,185 - 13154 mRNA_4786 0.37 0.4
1,011,194 + 13154 mRNA_4786 0.39 0.1
1,011,197 + 13154 mRNA_4786 0.39 0.9
1,011,211 - 13154 mRNA_4786 0.42 1.1
1,011,214 - 13154 mRNA_4786 0.43 0.3
1,011,221 + 13154 mRNA_4786 0.44 0.3
1,011,224 + 13154 mRNA_4786 0.45 1.3
1,011,228 + 13154 mRNA_4786 0.46 0.4
1,011,230 - 13154 mRNA_4786 0.46 0.3
1,011,230 + 13154 mRNA_4786 0.46 0.3
1,011,243 - 13154 mRNA_4786 0.49 0.6
1,011,244 - 13154 mRNA_4786 0.49 1.7
1,011,245 - 13154 mRNA_4786 0.49 -1.5
1,011,246 + 13154 mRNA_4786 0.49 0.6
1,011,263 - 13154 mRNA_4786 0.53 0.5
1,011,271 + 13154 mRNA_4786 0.54 0.7
1,011,274 + 13154 mRNA_4786 0.55 -0.2
1,011,276 - 13154 mRNA_4786 0.55 1.0
1,011,286 - 13154 mRNA_4786 0.57 -0.2
1,011,287 + 13154 mRNA_4786 0.57 -0.2
1,011,288 + 13154 mRNA_4786 0.58 0.2
1,011,290 - 13154 mRNA_4786 0.58 0.4
1,011,296 - 13154 mRNA_4786 0.59 0.2
1,011,299 - 13154 mRNA_4786 0.60 -0.7
1,011,304 + 13154 mRNA_4786 0.61 0.4
1,011,313 - 13154 mRNA_4786 0.63 -0.1
1,011,322 + 13154 mRNA_4786 0.64 1.3
1,011,326 + 13154 mRNA_4786 0.65 0.9
1,011,327 + 13154 mRNA_4786 0.65 0.6
1,011,334 - 13154 mRNA_4786 0.67 0.1
1,011,340 - 13154 mRNA_4786 0.68 0.5
1,011,342 - 13154 mRNA_4786 0.68 0.8
1,011,342 + 13154 mRNA_4786 0.68 -1.0
1,011,345 + 13154 mRNA_4786 0.69 0.7
1,011,355 + 13154 mRNA_4786 0.71 -0.1
1,011,362 - 13154 mRNA_4786 0.72 0.2
1,011,370 - 13154 mRNA_4786 0.74 1.2
1,011,374 + 13154 mRNA_4786 0.75 -0.3
1,011,374 + 13154 mRNA_4786 0.75 -0.4
1,011,381 + 13154 mRNA_4786 0.76 0.6
1,011,384 + 13154 mRNA_4786 0.77 0.4
1,011,496 - 0.3
1,011,501 - -0.4
1,011,530 - 0.0
1,011,623 + -1.1
1,012,237 + 13155 mRNA_4787 0.21 0.8