Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4754

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4753: 13121 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 927583 to 931061 13121 mRNA_4754: 13122 - ProSiteProfiles-F-box domain profile.-PS50181, at 931606 to 933249 13122

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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930,908 + 0.3
931,011 - 0.4
931,024 + -0.5
931,031 - 0.2
931,036 - 0.1
931,051 + 0.6
931,202 + 1.1
931,204 - -0.0
931,211 + 1.1
931,214 - -0.1
931,336 + 0.3
931,336 + 0.0
931,342 - 1.1
931,343 - -0.6
931,347 + 1.2
931,357 - 0.5
931,359 - 0.3
931,360 - 0.5
931,360 + 0.3
931,361 - 0.7
931,367 - 0.6
931,376 + 0.2
931,376 + 1.1
931,379 + -1.3
931,386 - 0.7
931,413 + -0.4
931,508 - -0.4
931,524 + 0.2
931,540 - -0.3
931,680 - 1.1
931,801 - 13122 mRNA_4754 0.12 1.3
931,806 - 13122 mRNA_4754 0.12 0.5
931,813 + 13122 mRNA_4754 0.13 0.3
931,881 - 13122 mRNA_4754 0.17 1.3
931,955 - 13122 mRNA_4754 0.21 0.7
931,989 + 13122 mRNA_4754 0.23 0.9
931,990 - 13122 mRNA_4754 0.23 0.2
932,016 + 13122 mRNA_4754 0.25 1.0
932,113 + 13122 mRNA_4754 0.31 -0.0
932,547 - 13122 mRNA_4754 0.57 2.2
932,572 - 13122 mRNA_4754 0.59 -0.2
932,584 + 13122 mRNA_4754 0.59 -0.2
932,848 + 13122 mRNA_4754 0.76 0.1
932,866 + 13122 mRNA_4754 0.77 0.1
932,875 + 13122 mRNA_4754 0.77 0.3
933,275 - 0.4
933,453 - -0.4
933,584 - 0.3
933,598 + -0.2
933,737 + 1.0
933,760 + -0.5
933,760 + 2.4
933,770 + -1.0
933,874 - 0.1
933,878 + 0.2
933,914 + -0.1