Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4750

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4749: 13117 - SUPERFAMILY--SSF52047, at 917502 to 919114 13117 mRNA_4750: 13118 - Hypothetical Protein, at 919411 to 921092 13118 mRNA_4751: 13119 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 921381 to 922742 13119

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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918,412 - 13117 mRNA_4749 0.56 -0.3
918,704 - 13117 mRNA_4749 0.75 0.2
918,823 - 13117 mRNA_4749 0.82 0.4
918,858 + 13117 mRNA_4749 0.84 -0.2
918,899 - 13117 mRNA_4749 0.87 0.1
919,121 + 1.3
919,141 - 0.2
919,155 + 0.5
919,330 + 1.6
919,335 - 0.3
919,451 - 1.4
919,462 + -1.0
919,468 - 0.5
919,471 + 0.8
919,581 + 13118 mRNA_4750 0.10 1.0
919,870 - 13118 mRNA_4750 0.27 -0.1
919,871 - 13118 mRNA_4750 0.27 1.5
920,913 - 13118 mRNA_4750 0.89 0.1
920,933 - 0.2
920,969 - 0.8
921,040 - 1.8
921,064 - -0.2
921,209 + 2.0
921,260 + 1.1
921,337 + 0.6
921,346 - 0.1
921,372 - 1.8
921,373 + 1.1
921,504 - 1.0
921,518 - 13119 mRNA_4751 0.10 2.7
921,538 + 13119 mRNA_4751 0.12 0.1
921,583 + 13119 mRNA_4751 0.15 -1.4
921,801 + 13119 mRNA_4751 0.31 -0.1
921,844 + 13119 mRNA_4751 0.34 0.4
922,065 - 13119 mRNA_4751 0.50 0.2