Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4745

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4744: 13112 - HMMPfam-Uncharacterized alpha/beta hydrolase domain (DUF2235)-PF09994, at 906003 to 908213 13112 mRNA_4745: 13113 - K17086 TM9SF2_4 transmembrane 9 superfamily member 2/4, at 908739 to 911438 13113 mRNA_4746: 13114 - Hypothetical Protein, at 911729 to 913359 13114

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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907,773 - 13112 mRNA_4744 0.80 -0.0
907,807 - 13112 mRNA_4744 0.82 -1.0
907,816 + 13112 mRNA_4744 0.82 0.2
907,949 + 13112 mRNA_4744 0.88 -0.6
908,191 - 1.1
908,288 + 0.1
908,444 + 0.4
908,605 + 2.2
908,674 + 0.2
908,682 - 0.2
908,827 + -0.9
908,963 + 2.7
909,068 + 13113 mRNA_4745 0.12 -0.7
909,151 - 13113 mRNA_4745 0.15 -0.5
909,331 + 13113 mRNA_4745 0.22 -0.2
909,477 - 13113 mRNA_4745 0.27 -0.5
909,602 + 13113 mRNA_4745 0.32 0.9
909,607 + 13113 mRNA_4745 0.32 0.1
909,654 + 13113 mRNA_4745 0.34 0.0
909,710 - 13113 mRNA_4745 0.36 0.3
909,801 - 13113 mRNA_4745 0.39 -0.7
909,816 - 13113 mRNA_4745 0.40 0.5
909,850 + 13113 mRNA_4745 0.41 0.2
909,897 - 13113 mRNA_4745 0.43 0.7
909,974 - 13113 mRNA_4745 0.46 0.4
909,980 - 13113 mRNA_4745 0.46 0.8
910,011 + 13113 mRNA_4745 0.47 0.3
910,117 + 13113 mRNA_4745 0.51 0.2
910,278 + 13113 mRNA_4745 0.57 0.5
910,315 - 13113 mRNA_4745 0.58 -1.3
910,335 - 13113 mRNA_4745 0.59 1.1
910,585 - 13113 mRNA_4745 0.68 0.2
910,627 - 13113 mRNA_4745 0.70 1.0
910,935 + 13113 mRNA_4745 0.81 1.3
911,021 - 13113 mRNA_4745 0.85 0.3
911,092 + 13113 mRNA_4745 0.87 -0.5
911,287 + -0.3
911,300 + 1.6
911,352 - 1.0
911,442 + 0.6
911,475 - 0.5
911,482 + 0.2
911,578 + -0.2
911,580 - 0.8
911,591 - -0.2
911,595 + 0.1
911,598 - -0.1
911,599 + -0.0
911,613 - 0.5
911,630 + 0.7
911,754 - 0.2
911,759 - 1.2
911,760 + 0.6
911,782 - 0.9
911,782 + 1.6
911,811 + 1.7
911,871 + -0.6
912,027 + 13114 mRNA_4746 0.18 1.8
912,071 - 13114 mRNA_4746 0.21 0.1
912,085 - 13114 mRNA_4746 0.22 -0.2
912,220 - 13114 mRNA_4746 0.30 0.9
912,332 - 13114 mRNA_4746 0.37 0.1