Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4730

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4729: 13097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 870839 to 873938 13097 mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874263 to 876540 13098 mRNA_4731: 13099 - K08770 UBC ubiquitin C, at 876740 to 878353 13099

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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873,551 - 13097 mRNA_4729 0.87 0.3
873,650 + 0.2
873,684 - 0.4
873,972 - 2.2
873,984 - 2.2
875,928 + 13098 mRNA_4730 0.73 0.2
876,202 + 13098 mRNA_4730 0.85 -0.3
876,356 - 1.3
876,517 - 1.7
876,620 + 0.7
876,637 + 0.2
876,643 - 1.0
876,649 - 1.7
876,652 - 0.3
876,656 - 1.3
876,657 + -0.3
876,657 + -1.2
876,665 + 0.4
876,670 + -0.2
876,671 + 0.6
876,677 + -1.5
876,679 - -0.8
876,695 + -0.0
876,698 - -0.0
876,728 - 0.5
876,737 - -0.1
876,757 + 0.9
876,759 - 0.5
876,760 + -0.1
876,769 - 0.8
876,775 - 0.5
876,780 - 0.3
876,793 - 1.8
876,795 - -0.2
876,820 - -0.3
876,836 + -0.2
876,841 - 1.1
876,847 + 0.7
876,851 + 0.1
876,859 - 0.0
876,861 - -0.3
876,869 + 0.2
876,873 + 0.8
876,875 + -0.1
876,891 - -0.0
876,894 + -1.4
876,894 + 0.5
876,897 + -1.0
876,923 + 13099 mRNA_4731 0.11 0.4
876,926 - 13099 mRNA_4731 0.12 0.0
876,976 - 13099 mRNA_4731 0.15 0.3
876,985 + 13099 mRNA_4731 0.15 0.5
877,032 - 13099 mRNA_4731 0.18 0.6
877,048 - 13099 mRNA_4731 0.19 0.4
877,063 - 13099 mRNA_4731 0.20 -0.9
877,064 - 13099 mRNA_4731 0.20 1.2
877,085 + 13099 mRNA_4731 0.21 -0.1
877,091 + 13099 mRNA_4731 0.22 1.4
877,227 + 13099 mRNA_4731 0.30 -0.4
877,362 + 13099 mRNA_4731 0.39 -0.4
877,510 - 13099 mRNA_4731 0.48 0.0
877,525 + 13099 mRNA_4731 0.49 1.3