Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4660

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4659: 13027 - KOG1134 Uncharacterized conserved protein, at 709545 to 713167 13027 mRNA_4660: 13028 - Interpro Transcription-silencing protein, cryptic loci regulator Clr2, at 713553 to 716343 13028 mRNA_4661: 13029 - K20180 VPS16 vacuolar protein sorting-associated protein 16, at 716633 to 720333 13029

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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712,599 + 13027 mRNA_4659 0.84 1.1
712,884 - -0.5
712,901 - 0.2
712,918 - -0.3
712,932 + 0.8
713,060 + 0.2
713,213 + 0.9
713,215 + 0.5
713,216 - 0.2
713,216 - 0.6
713,223 + 0.3
713,225 - -0.3
713,239 + 0.7
713,244 - 0.1
713,249 - -0.2
713,249 - -0.2
713,301 + -0.6
713,303 + 0.2
713,312 - -1.1
713,326 - 1.5
713,328 - 0.2
713,329 - -0.2
713,331 + -0.1
713,331 + 1.0
713,341 + 1.6
713,348 - 1.2
713,351 + 0.5
713,360 - 0.0
713,367 + -0.1
713,382 - 1.0
713,391 + -0.7
713,487 - -0.7
713,523 - 0.2
713,530 - 0.1
713,695 - -0.5
713,990 - 13028 mRNA_4660 0.16 0.9
714,137 + 13028 mRNA_4660 0.21 0.8
714,882 + 13028 mRNA_4660 0.48 1.0
716,208 + 0.9
716,355 - 0.7
716,359 - 0.0
716,362 + -0.0
716,392 + 0.4
716,495 - -0.1
716,495 - -0.1
716,506 - 0.1
716,507 - 0.5
716,512 + 0.3
716,513 - -0.1
716,514 - 0.0
716,517 + 0.5
716,518 + -0.4
716,523 + 0.3
716,525 + 0.2
716,526 + 0.4
716,527 + 0.1
716,528 + 0.2
716,532 + -0.1
716,532 + 0.5
716,534 + 0.1