Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4638

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4637: 13005 - Hypothetical Protein, at 661764 to 663098 13005 mRNA_4638: 13006 - HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839,SUPERFAMILY--SSF52266, at 663192 to 664874 13006 mRNA_4639: 13007 - KOG3469 Cytochrome c oxidase, subunit VIa/COX13, at 665005 to 666466 13007

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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662,271 - 13005 mRNA_4637 0.38 -0.3
662,272 + 13005 mRNA_4637 0.38 -0.1
662,540 - 13005 mRNA_4637 0.58 -1.7
662,715 - 13005 mRNA_4637 0.71 2.4
662,731 - 13005 mRNA_4637 0.72 0.3
662,924 + 13005 mRNA_4637 0.87 0.6
663,169 + -0.0
663,519 - 13006 mRNA_4638 0.19 0.6
663,745 + 13006 mRNA_4638 0.33 0.5
663,787 + 13006 mRNA_4638 0.35 -0.1
664,058 + 13006 mRNA_4638 0.51 -0.2
664,311 + 13006 mRNA_4638 0.66 2.2
664,505 - 13006 mRNA_4638 0.78 0.8
664,527 - 13006 mRNA_4638 0.79 -0.1
664,637 - 13006 mRNA_4638 0.86 0.5
664,641 + 13006 mRNA_4638 0.86 1.2
664,647 - 13006 mRNA_4638 0.86 1.0
664,805 - 1.7
664,816 + -0.7
664,826 + 0.5
664,898 - 0.4
664,932 - 0.6
664,949 - 0.2
664,974 - 0.0
665,006 + 0.6
665,069 - -0.2
665,091 - 0.2
665,333 + 13007 mRNA_4639 0.22 0.9
665,367 - 13007 mRNA_4639 0.25 0.8
665,371 - 13007 mRNA_4639 0.25 -0.0
665,394 - 13007 mRNA_4639 0.27 0.2
665,405 - 13007 mRNA_4639 0.27 0.1
665,409 + 13007 mRNA_4639 0.28 0.3
665,559 + 13007 mRNA_4639 0.38 0.6
665,845 - 13007 mRNA_4639 0.57 -0.1