Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4606

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4605: 12973 - KOG0254 Predicted transporter (major facilitator superfamily), at 568226 to 569633 12973 mRNA_4606: 12974 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,ProSitePatterns-Zinc-containing alcohol dehydrogenases signature.-PS00059,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 569895 to 571183 12974 mRNA_4607: 12975 - BLAST TrfA domain protein, putative [Rhizoctonia solani AG-..., at 571268 to 571973 12975

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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569,009 + 12973 mRNA_4605 0.56 1.1
569,165 - 12973 mRNA_4605 0.67 -0.9
570,031 - 12974 mRNA_4606 0.11 0.6
570,588 - 12974 mRNA_4606 0.54 1.5
570,604 - 12974 mRNA_4606 0.55 0.1
570,671 + 12974 mRNA_4606 0.60 -0.3
570,777 + 12974 mRNA_4606 0.68 0.4
571,193 + -0.1
571,250 + 0.4
571,257 - 0.2
571,360 + 12975 mRNA_4607 0.13 -0.1
571,397 - 12975 mRNA_4607 0.18 -0.4
571,564 - 12975 mRNA_4607 0.42 0.4
571,680 + 12975 mRNA_4607 0.58 1.5
571,924 - 0.2
572,085 + 0.3
572,100 + 1.5
572,113 - 1.4
572,118 - 0.4
572,151 + -0.7
572,179 + 1.7