Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4603

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4602: 12970 - HMMPfam-NYN domain-PF01936, at 561866 to 562949 12970 mRNA_4603: 12971 - K07119 K07119 uncharacterized protein, at 563356 to 565108 12971 mRNA_4604: 12972 - K10747 LIG1 DNA ligase 1, at 565709 to 567987 12972

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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562,571 - 12970 mRNA_4602 0.65 -0.2
562,709 + 12970 mRNA_4602 0.78 0.4
562,733 + 12970 mRNA_4602 0.80 0.9
562,831 + 12970 mRNA_4602 0.89 1.0
562,857 + 1.1
562,865 + 0.8
562,870 + 0.5
562,871 + 1.5
563,143 - 0.4
563,151 + 0.5
563,160 + 0.7
563,180 + 0.6
563,326 - 0.2
563,464 - 0.5
564,002 + 12971 mRNA_4603 0.37 -0.4
564,033 + 12971 mRNA_4603 0.39 0.2
564,050 + 12971 mRNA_4603 0.40 1.0
564,182 + 12971 mRNA_4603 0.47 -0.3
564,195 + 12971 mRNA_4603 0.48 0.1
564,624 - 12971 mRNA_4603 0.72 -0.4
564,626 - 12971 mRNA_4603 0.72 0.1
564,635 + 12971 mRNA_4603 0.73 0.3
564,751 - 12971 mRNA_4603 0.80 -0.2
564,871 + 12971 mRNA_4603 0.86 0.4
564,925 + 12971 mRNA_4603 0.90 -0.6
564,925 + 12971 mRNA_4603 0.90 -0.6
565,045 - 0.9
565,049 + 0.5
565,054 - 1.0
565,063 + 0.2
565,196 - -0.6
565,197 - -1.1
565,232 + 0.9
565,250 + 0.6
565,255 + -0.0
565,276 - 0.0
565,282 + 0.5
565,285 + 2.1
565,288 - 0.6
565,298 + 1.8
565,315 + 0.6
565,324 + -0.1
565,329 + 1.0
565,334 - 2.0
565,337 - 1.9
565,362 + 0.7
565,371 + 1.0
565,373 - 0.3
565,377 - 0.6
565,396 + -0.6
565,405 - 0.7
565,466 - 0.1
565,473 + -0.1
565,481 - 0.1
565,482 - -0.0
565,487 + -0.5
565,491 - 0.5
565,502 - 0.8
565,504 - -1.0
565,506 + 0.6
565,508 - 0.8
565,513 + 0.1
565,518 + 0.8
565,522 + -0.7
565,528 + 0.5
565,534 + 1.6
565,535 - -0.2
565,541 - 0.5
565,549 + -0.5
565,551 - 1.1
565,555 + 0.5
565,592 - 1.5
565,600 + -0.9
565,600 - 0.1
565,603 - 0.4
565,615 - -0.6
565,617 + 0.7
565,641 + 0.6
565,644 + 0.9
565,728 + 1.2
565,755 + 0.4