Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4600

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4599: 12967 - K12820 DHX15, PRP43 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43, at 554983 to 558487 12967 mRNA_4600: 12968 - K08343 ATG3 ubiquitin-like-conjugating enzyme ATG3, at 558585 to 560759 12968 mRNA_4601: 12969 - HMMPfam-Sen15 protein-PF09631,SUPERFAMILY--SSF53032, at 560875 to 561580 12969

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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558,354 - 0.4
558,358 - 0.4
558,499 - 0.5
558,523 + 1.2
558,533 - 0.4
558,795 - 0.1
558,832 + 12968 mRNA_4600 0.11 1.1
559,087 - 12968 mRNA_4600 0.23 1.6
559,390 - 12968 mRNA_4600 0.37 0.9
559,409 - 12968 mRNA_4600 0.38 0.5
559,571 + 12968 mRNA_4600 0.45 -0.3
559,814 - 12968 mRNA_4600 0.57 0.1
559,819 + 12968 mRNA_4600 0.57 -2.3
559,905 - 12968 mRNA_4600 0.61 -0.4
560,080 - 12968 mRNA_4600 0.69 -0.5
560,223 - 12968 mRNA_4600 0.75 0.6
560,541 + 12968 mRNA_4600 0.90 0.4
560,661 + 0.7
560,690 - -0.4
560,846 - 0.7
560,849 + 0.6
560,860 + -0.4
561,582 - 0.1
561,633 - 0.3
561,698 - -0.3
561,705 + 1.3
561,711 + 0.8
561,734 - 0.3