Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4570

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489481 to 490955 12937 mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491173 to 492372 12938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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490,963 - 0.1
490,972 + 0.8
490,976 + -0.2
490,980 + -1.1
490,983 - 0.4
490,990 + -0.2
491,029 + 0.2
491,030 - 1.9
491,040 + 0.5
491,041 - 0.2
491,133 - 1.1
491,145 + 0.1
491,150 - 1.3
491,181 + -0.1
491,193 + 0.2
491,199 - -1.1
491,280 + 0.2
491,314 + 12938 mRNA_4570 0.12 0.5
491,318 - 12938 mRNA_4570 0.12 0.4
491,442 - 12938 mRNA_4570 0.22 -1.8
491,453 - 12938 mRNA_4570 0.23 0.9
491,542 - 12938 mRNA_4570 0.31 0.4
491,568 - 12938 mRNA_4570 0.33 0.6
491,807 - 12938 mRNA_4570 0.53 1.9
491,824 + 12938 mRNA_4570 0.54 2.3
491,977 - 12938 mRNA_4570 0.67 0.5
491,987 - 12938 mRNA_4570 0.68 0.4
491,991 + 12938 mRNA_4570 0.68 0.5
492,152 + 12938 mRNA_4570 0.82 0.8
492,262 + 0.6
492,286 + -1.0
492,298 + 0.3
492,316 + 0.1
492,426 - 0.7
492,438 - -0.6
492,449 - 0.5
492,459 + 0.4
492,569 + 0.3
492,576 + -0.1
492,581 - 1.1
492,587 - -0.2
492,591 - 0.4
492,598 - 0.7
492,604 - 1.0
492,610 + 0.2
492,611 + 0.3
492,612 + 0.5
492,707 - 0.7
492,717 - 0.4
492,726 + 1.5
492,726 - -0.0
492,726 + 0.7
492,728 + -0.5
492,740 + 0.3
492,748 - -0.2
492,748 + 0.4
492,753 + -1.0
492,754 + 1.0
492,758 - 0.6
492,776 - -0.7
492,777 - 0.8
492,783 - 0.3
492,799 - 0.9
492,799 + -0.5
492,800 - 0.3
492,803 - 0.7
492,831 - 0.4
492,832 - 0.8
492,841 + 2.3
492,849 - 1.3
492,853 + -0.5
492,859 - -0.5
492,863 + 0.1
492,863 + 0.2
492,872 + 0.2
492,873 + 2.3
492,873 - 2.1
492,875 + 0.7
492,884 - 0.2
492,886 - -1.5
492,889 - -0.9
492,898 - 0.0
492,907 + -1.5
492,919 - 0.7
492,919 - 0.8
492,947 - 1.1
492,947 + 0.4
492,949 - 0.0
492,954 + 0.1
492,960 - 0.4
492,994 - -0.0
493,025 + 0.9
493,089 + 0.8
493,166 - -0.2