Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4560

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4559: 12927 - HMMPfam-PAP2 superfamily-PF01569,SMART-Acid phosphatase homologues-SM00014,SUPERFAMILY--SSF48317, at 460890 to 462526 12927 mRNA_4560: 12928 - Hypothetical Protein, at 463085 to 464279 12928 mRNA_4561: 12929 - K06990 MEMO1 MEMO1 family protein, at 464488 to 466003 12929

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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462,587 - 1.3
462,599 - 0.3
462,761 + 1.0
462,764 + 1.3
462,872 + 0.5
462,882 + 0.5
462,894 + 0.2
463,188 + 0.3
463,888 + 12928 mRNA_4560 0.67 0.2
464,053 - 12928 mRNA_4560 0.81 1.1
464,163 + -0.2
464,335 + 1.0
464,335 + -0.1
464,342 + -0.7
464,371 + 1.2
464,393 - 0.9
464,444 + -0.3
464,541 - -0.2
464,547 + 0.4
464,556 - 0.2
464,563 - -0.5
465,113 - 12929 mRNA_4561 0.41 0.0