Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4540

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4539: 12907 - HMMPfam-DNA polymerase subunit Cdc27-PF09507, at 410744 to 412303 12907 mRNA_4540: 12908 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 412485 to 416287 12908 mRNA_4541: 12909 - K03457 TC.NCS1 nucleobase-cation symporter-1, NCS1 family, at 417161 to 419747 12909

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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411,827 + 12907 mRNA_4539 0.69 -0.1
412,174 + 0.3
412,749 + 1.0
414,317 + 12908 mRNA_4540 0.48 -0.5
414,351 - 12908 mRNA_4540 0.49 -0.2
414,789 - 12908 mRNA_4540 0.61 1.3
414,949 + 12908 mRNA_4540 0.65 0.4
415,108 - 12908 mRNA_4540 0.69 -0.2
415,235 + 12908 mRNA_4540 0.72 -0.1
415,677 - 12908 mRNA_4540 0.84 0.7
415,704 + 12908 mRNA_4540 0.85 0.1
415,813 - 12908 mRNA_4540 0.88 -0.0
415,826 - 12908 mRNA_4540 0.88 1.0
415,938 + 1.0
416,111 - 0.7
416,246 - 0.0
416,272 - -0.2
416,273 + -0.0
416,284 + 0.2
416,394 - -0.1
416,420 + -0.3
416,428 + 0.1
416,548 - -0.7
416,572 - 0.4
416,733 - -0.3
416,756 - -0.5
416,859 - 1.2
416,868 - 0.1
416,877 + -0.5
416,910 - 0.4
416,914 - 0.4
416,915 + -0.1
416,916 + 0.2