Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4478

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4477: 12845 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 276130 to 277462 12845 mRNA_4478: 12846 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 277974 to 281759 12846 mRNA_4479: 12847 - K17290 HTATIP2 oxidoreductase, at 282366 to 283335 12847

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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277,455 + -0.7
277,503 - -0.3
277,589 - -0.2
277,621 - 0.5
277,633 - 1.4
277,636 - 0.9
277,643 - -0.1
277,700 + 1.7
277,702 + 0.6
277,702 + 0.4
277,957 - -0.4
278,259 + 0.7
278,836 - 12846 mRNA_4478 0.23 -0.6
278,980 + 12846 mRNA_4478 0.27 0.7
278,998 + 12846 mRNA_4478 0.27 -0.2
279,134 + 12846 mRNA_4478 0.31 0.3
279,266 - 12846 mRNA_4478 0.34 0.5
279,284 - 12846 mRNA_4478 0.35 0.4
279,526 - 12846 mRNA_4478 0.41 -0.0
279,564 - 12846 mRNA_4478 0.42 0.4
279,981 + 12846 mRNA_4478 0.53 0.4
280,149 - 12846 mRNA_4478 0.57 0.4
280,149 + 12846 mRNA_4478 0.57 0.9
280,184 - 12846 mRNA_4478 0.58 -0.2
280,457 - 12846 mRNA_4478 0.66 -0.5
280,476 + 12846 mRNA_4478 0.66 -0.6
280,737 + 12846 mRNA_4478 0.73 0.5
281,212 - 12846 mRNA_4478 0.86 1.2
281,438 + 0.1
281,474 + 0.3
281,622 + -0.3
282,041 - 0.2
282,043 + -0.9
282,048 + 0.4
282,048 - 0.2
282,049 + 0.5
282,065 - 0.8
282,099 - 0.3
282,108 + -0.5
282,111 - -0.2
282,113 - 0.1
282,115 - 1.5
282,124 - 0.2
282,142 + 0.6
282,144 + 0.9
282,172 + -1.6
282,253 + -0.4
282,351 + 0.7
282,406 - -0.0
282,413 - -0.0