Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4455

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4454: 12822 - K03380 E1.14.13.7 phenol 2-monooxygenase, at 223173 to 226550 12822 mRNA_4455: 12823 - K08489 STX16 syntaxin 16, at 226736 to 228552 12823 mRNA_4456: 12824 - BLAST C-x8-C-x5-C-x3-H type zinc finger protein [Nanniz..., at 228673 to 230476 12824

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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225,905 - 12822 mRNA_4454 0.81 0.0
225,905 - 12822 mRNA_4454 0.81 0.5
226,052 - 12822 mRNA_4454 0.85 0.2
226,363 - 0.3
226,378 - -0.0
226,388 + 0.0
226,388 + -0.6
226,458 + 0.3
226,510 + -0.3
226,539 - 0.4
226,699 - 0.8
226,823 + -0.5
226,837 - -0.0
226,856 - -1.2
226,868 - 1.0
226,972 - 12823 mRNA_4455 0.13 -0.2
227,382 + 12823 mRNA_4455 0.36 0.1
227,586 - 12823 mRNA_4455 0.47 -0.3
227,593 + 12823 mRNA_4455 0.47 0.3
227,708 - 12823 mRNA_4455 0.53 1.6
227,801 - 12823 mRNA_4455 0.59 0.6
227,960 - 12823 mRNA_4455 0.67 -0.9
228,309 + 12823 mRNA_4455 0.87 0.4
228,428 - 1.6
228,431 - -0.4
228,586 + 1.2
228,589 + 0.1
228,594 - -0.3
228,595 - 0.5
228,598 - 1.2
228,613 + -0.1
228,621 - 0.9
228,621 - 0.7
228,720 + 0.2
228,735 - -0.1
228,740 - 0.0
228,898 - 12824 mRNA_4456 0.12 1.2
228,914 + 12824 mRNA_4456 0.13 0.3
228,922 + 12824 mRNA_4456 0.14 -0.8
228,936 - 12824 mRNA_4456 0.15 0.1
228,974 - 12824 mRNA_4456 0.17 -0.1
229,027 + 12824 mRNA_4456 0.20 -0.1
229,028 - 12824 mRNA_4456 0.20 -0.1
229,056 + 12824 mRNA_4456 0.21 0.6
229,067 - 12824 mRNA_4456 0.22 0.1
229,070 - 12824 mRNA_4456 0.22 0.0
229,071 + 12824 mRNA_4456 0.22 -0.2
229,121 + 12824 mRNA_4456 0.25 0.3
229,197 - 12824 mRNA_4456 0.29 0.0
229,211 - 12824 mRNA_4456 0.30 0.1
229,228 - 12824 mRNA_4456 0.31 -0.5
229,229 + 12824 mRNA_4456 0.31 0.9
229,235 + 12824 mRNA_4456 0.31 -0.2
229,237 - 12824 mRNA_4456 0.31 -0.3
229,333 - 12824 mRNA_4456 0.37 0.1
229,335 + 12824 mRNA_4456 0.37 0.6