Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4448

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4447: 12815 - K12666 OST1, RPN1 oligosaccharyltransferase complex subunit alpha (ribophorin I), at 204059 to 206130 12815 mRNA_4448: 12816 - KOG3979 FGF receptor activating protein 1, at 206220 to 210253 12816 mRNA_4449: 12817 - K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1, at 210344 to 212336 12817

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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206,487 + -1.4
206,930 - 12816 mRNA_4448 0.18 1.5
206,987 + 12816 mRNA_4448 0.19 -0.2
207,076 - 12816 mRNA_4448 0.21 -0.3
207,330 - 12816 mRNA_4448 0.28 2.1
207,852 + 12816 mRNA_4448 0.40 0.0
207,953 + 12816 mRNA_4448 0.43 0.3
207,974 - 12816 mRNA_4448 0.43 1.2
208,401 - 12816 mRNA_4448 0.54 0.0
208,554 + 12816 mRNA_4448 0.58 0.4
209,128 - 12816 mRNA_4448 0.72 1.8
209,291 - 12816 mRNA_4448 0.76 0.0
209,569 - 12816 mRNA_4448 0.83 0.7
209,606 + 12816 mRNA_4448 0.84 -1.7
209,864 - 0.2
209,980 + 1.4
209,986 + -1.1
209,996 - 0.5
210,013 + -0.3
210,024 + 0.6
210,032 + 0.4
210,335 + 0.3
210,615 - 12817 mRNA_4449 0.14 0.7
210,779 - 12817 mRNA_4449 0.22 0.0
210,908 - 12817 mRNA_4449 0.28 1.3
211,048 - 12817 mRNA_4449 0.35 -0.1