Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4408

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4407: 12775 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 109306 to 110822 12775 mRNA_4408: 12776 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 111207 to 112706 12776 mRNA_4409: 12777 - KOG1218 Proteins containing Ca2+-binding EGF-like domains, at 113128 to 114818 12777

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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110,390 - 12775 mRNA_4407 0.71 0.7
110,534 + 12775 mRNA_4407 0.81 0.6
110,566 + 12775 mRNA_4407 0.83 0.5
110,571 - 12775 mRNA_4407 0.83 0.4
110,986 + 0.9
110,993 - 0.6
111,649 - 12776 mRNA_4408 0.29 0.2
111,713 - 12776 mRNA_4408 0.34 0.4
112,123 - 12776 mRNA_4408 0.61 -1.0
112,169 + 12776 mRNA_4408 0.64 -0.3
112,435 - 12776 mRNA_4408 0.82 -0.3
112,436 + 12776 mRNA_4408 0.82 0.2
112,560 - 0.6
112,745 - 0.2
112,888 + 0.9
112,998 - 0.4
113,025 + 1.2
113,046 - 1.4
113,055 - 0.6
113,075 + 0.4
113,075 - 0.2
113,077 + 0.1
113,153 + -0.4
113,218 + 0.5
113,313 - 12777 mRNA_4409 0.11 -0.3
113,567 + 12777 mRNA_4409 0.26 1.0
113,567 + 12777 mRNA_4409 0.26 -0.5