Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4388

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4387: 12755 - HMMPfam-Ctf8-PF09696, at 71691 to 72315 12755 mRNA_4388: 12756 - KOG2084 Predicted histone tail methylase containing SET domain, at 72775 to 74031 12756 mRNA_4389: 12757 - K10735 GINS4, SLD5 GINS complex subunit 4, at 74390 to 75580 12757

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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72,184 + 12755 mRNA_4387 0.79 0.6
72,219 + 12755 mRNA_4387 0.84 1.1
72,832 - 0.7
73,016 - 12756 mRNA_4388 0.19 0.3
73,056 - 12756 mRNA_4388 0.22 0.2
73,699 - 12756 mRNA_4388 0.74 -1.1
73,962 - 1.8
73,973 + 1.0
74,259 - -0.7
74,274 - 1.4
74,276 - 0.1
74,285 - 0.1
74,289 + 0.5
74,334 + 0.9
74,341 - 1.3