Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4343

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4342: 12710 - K08801 PASK PAS domain containing serine/threonine kinase, at 1951654 to 1955244 12710 mRNA_4343: 12711 - K15206 TFC7 transcription factor C subunit 7, at 1955743 to 1957166 12711 mRNA_4344: 12712 - HMMPfam-Secretory lipase-PF03583,SUPERFAMILY--SSF53474, at 1957687 to 1959260 12712

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,955,005 + 0.8
1,955,006 - 0.7
1,955,035 + 0.2
1,955,160 - 1.4
1,955,166 + 0.2
1,955,306 - 0.1
1,955,320 + 0.5
1,955,337 - 0.7
1,955,366 + 1.0
1,955,464 + -0.2
1,955,481 + 0.4
1,955,488 + 0.2
1,955,621 + 0.5
1,955,636 - 0.5
1,955,730 + 0.2
1,955,765 - 0.0
1,956,190 + 12711 mRNA_4343 0.31 1.3
1,956,481 - 12711 mRNA_4343 0.52 1.0
1,956,517 + 12711 mRNA_4343 0.54 -0.3
1,956,621 - 12711 mRNA_4343 0.62 -1.1
1,956,876 + 12711 mRNA_4343 0.80 1.3
1,956,879 - 12711 mRNA_4343 0.80 -0.0
1,956,923 + 12711 mRNA_4343 0.83 -0.1
1,957,051 - 0.3
1,957,079 + -0.9
1,957,088 - -0.9
1,957,162 + -0.2
1,957,163 - -0.2
1,957,185 + 0.1
1,957,219 - -0.1
1,957,361 + -0.2
1,957,481 + 0.8
1,957,531 + -0.5
1,957,670 - 0.4
1,957,681 - -0.4
1,957,826 + -0.2
1,957,946 - 12712 mRNA_4344 0.16 1.2
1,957,952 - 12712 mRNA_4344 0.17 -0.4
1,957,953 + 12712 mRNA_4344 0.17 0.4
1,957,993 + 12712 mRNA_4344 0.19 0.7
1,958,068 - 12712 mRNA_4344 0.24 0.2
1,958,111 - 12712 mRNA_4344 0.27 0.9