Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4328

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4327: 12695 - K18754 LIN28 protein lin-28, at 1916431 to 1918530 12695 mRNA_4328: 12696 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1918797 to 1920453 12696 mRNA_4329: 12697 - KOG1802 RNA helicase nonsense mRNA reducing factor (pNORF1), at 1921131 to 1925118 12697

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,917,809 - 12695 mRNA_4327 0.66 0.9
1,917,987 + 12695 mRNA_4327 0.74 0.2
1,918,155 - 12695 mRNA_4327 0.82 -0.2
1,918,303 + 12695 mRNA_4327 0.89 -0.0
1,919,038 - 12696 mRNA_4328 0.15 2.1
1,919,532 + 12696 mRNA_4328 0.44 0.4
1,920,024 - 12696 mRNA_4328 0.74 0.7
1,920,458 - -0.2
1,920,470 - 1.4
1,920,488 + 1.7
1,920,491 - 0.6
1,920,609 - -2.2
1,920,614 + 0.1
1,920,616 + 1.3
1,920,637 - 0.2
1,920,646 - 0.6
1,920,781 + -0.6
1,920,924 + 1.7
1,920,928 - 0.3