Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4278

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4277: 12645 - K08773 RALBP1 RalA-binding protein 1, at 1781078 to 1785287 12645 mRNA_4278: 12646 - HMMPfam-Voltage-dependent anion channel-PF03595, at 1786017 to 1788218 12646 mRNA_4279: 12647 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1788409 to 1790808 12647

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,785,051 + 0.9
1,785,217 + -0.0
1,785,290 - 0.0
1,785,345 - 0.3
1,785,357 + -0.2
1,785,491 + 0.7
1,785,629 - -0.1
1,785,629 - 0.1
1,785,639 + 0.8
1,785,651 + 0.6
1,785,889 + -0.2
1,785,921 - 0.1
1,785,929 - 1.0
1,786,089 + 1.8
1,786,110 - 1.1
1,786,704 - 12646 mRNA_4278 0.31 0.2
1,786,706 + 12646 mRNA_4278 0.31 0.1
1,786,810 + 12646 mRNA_4278 0.36 0.6
1,786,842 + 12646 mRNA_4278 0.37 -0.1
1,786,948 - 12646 mRNA_4278 0.42 0.2
1,786,964 - 12646 mRNA_4278 0.43 0.4
1,787,108 + 12646 mRNA_4278 0.50 0.2
1,787,253 + 12646 mRNA_4278 0.56 1.4
1,787,275 - 12646 mRNA_4278 0.57 0.5
1,787,380 + 12646 mRNA_4278 0.62 -0.4
1,787,890 - 12646 mRNA_4278 0.85 0.3
1,787,964 - 12646 mRNA_4278 0.88 -0.5
1,788,011 + 0.9
1,788,143 + 0.0
1,788,249 - 1.4
1,788,272 + 0.7
1,788,277 + -0.1
1,788,286 + 0.3
1,788,293 - 0.7
1,788,295 - 0.7
1,788,317 - -0.3
1,788,398 + 0.0
1,788,455 - 0.4
1,788,465 - 0.5
1,788,465 - -0.2
1,788,465 + 0.2
1,788,468 + 0.8
1,788,475 + 1.1
1,789,187 - 12647 mRNA_4279 0.32 -0.3