Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4197

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4196: 12564 - K12343 SRD5A1 3-oxo-5-alpha-steroid 4-dehydrogenase 1, at 1586838 to 1587953 12564 mRNA_4197: 12565 - K00512 CYP17A steroid 17alpha-monooxygenase / 17alpha-hydroxyprogesterone deacetylase, at 1588332 to 1590437 12565 mRNA_4198: 12566 - K00166 BCKDHA, bkdA1 2-oxoisovalerate dehydrogenase E1 component alpha subunit, at 1590487 to 1592266 12566

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,587,458 - 12564 mRNA_4196 0.56 0.3
1,587,754 - 12564 mRNA_4196 0.82 -0.0
1,587,901 + -0.4
1,587,921 + -0.4
1,588,050 - -0.9
1,588,052 - 1.0
1,588,054 - 0.6
1,588,072 + 0.4
1,588,187 + 1.2
1,588,198 - 0.0
1,588,224 - 0.1
1,589,064 + 12565 mRNA_4197 0.35 0.3
1,589,184 - 12565 mRNA_4197 0.40 1.5
1,589,387 - 12565 mRNA_4197 0.50 1.4
1,589,660 - 12565 mRNA_4197 0.63 0.4
1,590,082 - 12565 mRNA_4197 0.83 1.4
1,590,103 + 12565 mRNA_4197 0.84 1.3
1,590,385 - 1.6
1,591,418 + 12566 mRNA_4198 0.52 0.9
1,591,427 - 12566 mRNA_4198 0.53 0.9