Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4185

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4184: 12552 - K20989 DUR3 urea-proton symporter, at 1558379 to 1561248 12552 mRNA_4185: 12553 - KOG1212 Amidases, at 1562094 to 1563941 12553 mRNA_4186: 12554 - KOG2806 Chitinase, at 1564500 to 1566078 12554

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,561,234 - 0.6
1,561,534 - -0.9
1,561,606 + 0.1
1,561,872 + 0.3
1,562,022 + 0.5
1,562,165 - 0.7
1,562,167 - -0.0
1,562,478 + 12553 mRNA_4185 0.21 0.8
1,562,630 + 12553 mRNA_4185 0.29 1.1
1,562,787 + 12553 mRNA_4185 0.38 -0.3
1,562,789 - 12553 mRNA_4185 0.38 2.0
1,562,965 + 12553 mRNA_4185 0.47 1.4
1,563,079 + 12553 mRNA_4185 0.53 1.8
1,563,117 + 12553 mRNA_4185 0.55 0.7
1,563,254 - 12553 mRNA_4185 0.63 -0.8
1,563,556 + 12553 mRNA_4185 0.79 1.7
1,563,597 + 12553 mRNA_4185 0.81 1.4
1,563,597 + 12553 mRNA_4185 0.81 0.1
1,564,360 + -0.3
1,564,386 - 0.8
1,564,544 - 0.5
1,564,547 + -1.3
1,564,549 - 1.3
1,564,675 - 12554 mRNA_4186 0.11 0.7
1,564,689 - 12554 mRNA_4186 0.12 1.1
1,564,817 + 12554 mRNA_4186 0.20 -1.6
1,564,834 + 12554 mRNA_4186 0.21 0.6