Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4144

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4143: 12511 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,HMMPfam-Acetyltransferase (GNAT) domain-PF13444,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 1456221 to 1457720 12511 mRNA_4144: 12512 - K01669 phrB deoxyribodipyrimidine photo-lyase, at 1457920 to 1460424 12512 mRNA_4145: 12513 - K00641 metX homoserine O-acetyltransferase, at 1460929 to 1462648 12513

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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1,456,989 + 12511 mRNA_4143 0.51 0.8
1,457,478 - 12511 mRNA_4143 0.84 -0.0
1,457,554 - 12511 mRNA_4143 0.89 0.5
1,457,841 + 0.7
1,458,158 - 0.6
1,458,358 - 12512 mRNA_4144 0.17 0.6
1,458,613 + 12512 mRNA_4144 0.28 0.7
1,458,748 + 12512 mRNA_4144 0.33 0.1
1,459,005 - 12512 mRNA_4144 0.43 0.0
1,459,026 + 12512 mRNA_4144 0.44 1.2
1,459,071 + 12512 mRNA_4144 0.46 1.1
1,459,174 - 12512 mRNA_4144 0.50 0.5
1,459,220 + 12512 mRNA_4144 0.52 1.3
1,459,327 + 12512 mRNA_4144 0.56 -0.1
1,459,789 + 12512 mRNA_4144 0.75 1.3
1,459,896 + 12512 mRNA_4144 0.79 1.2
1,460,073 + 12512 mRNA_4144 0.86 1.5
1,460,368 + 0.8
1,460,371 + 0.3
1,460,494 + 0.5
1,460,509 - 1.2
1,460,521 + 0.5
1,460,643 + 0.7
1,460,645 - 0.8
1,460,650 + 0.1
1,460,666 + 1.4
1,460,681 + 0.8
1,460,681 + -0.3
1,460,681 + 0.2
1,460,819 + 0.8
1,460,820 + 0.8
1,460,985 + -1.1