Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3945

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3944: 12312 - BLAST trna guanine-n1-methyltransferase [Ceraceosorus bomba..., at 961006 to 963369 12312 mRNA_3945: 12313 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 963699 to 967662 12313 mRNA_3946: 12314 - K06176 truD, PUS7 tRNA pseudouridine13 synthase, at 967876 to 970743 12314

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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962,717 + 12312 mRNA_3944 0.72 -0.1
963,019 + 12312 mRNA_3944 0.85 -1.7
963,478 - 1.5
963,496 - 0.2
963,501 - 1.2
963,502 + 0.8
963,515 + 1.5
963,516 + 0.8
963,517 - -0.5
963,517 - 0.5
963,527 - -0.4
963,529 + -0.1
963,532 - 0.3
963,533 + 0.6
963,665 + 1.1
963,675 - 0.5
963,778 - 0.1
963,797 - -0.4
963,816 + 0.6
964,577 - 12313 mRNA_3945 0.22 0.2
964,965 + 12313 mRNA_3945 0.32 2.6
965,081 - 12313 mRNA_3945 0.35 1.6
965,579 + 12313 mRNA_3945 0.47 0.0
965,955 - 12313 mRNA_3945 0.57 -1.7
966,179 + 12313 mRNA_3945 0.63 0.9
966,855 - 12313 mRNA_3945 0.80 -0.4
966,921 - 12313 mRNA_3945 0.81 0.5
967,020 + 12313 mRNA_3945 0.84 0.3
967,636 - 0.5
967,759 + 1.2
967,909 + -0.4
968,235 + 12314 mRNA_3946 0.13 -0.3
968,527 - 12314 mRNA_3946 0.23 -0.7
968,539 - 12314 mRNA_3946 0.23 -1.0