Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3938

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3937: 12305 - KOG0692 Pentafunctional AROM protein, at 946371 to 947832 12305 mRNA_3938: 12306 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 948000 to 949684 12306 mRNA_3939: 12307 - K13954 yiaY alcohol dehydrogenase, at 950019 to 951719 12307

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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947,268 + 12305 mRNA_3937 0.61 0.2
947,294 + 12305 mRNA_3937 0.63 0.1
947,433 - 12305 mRNA_3937 0.73 0.8
947,436 + 12305 mRNA_3937 0.73 0.3
947,560 - 12305 mRNA_3937 0.81 2.0
947,592 - 12305 mRNA_3937 0.84 0.7
947,596 + 12305 mRNA_3937 0.84 0.2
947,714 - 0.3
947,721 + 0.4
947,738 - 0.3
947,780 - 0.1
947,886 + 0.5
948,032 - 0.1
948,309 + 12306 mRNA_3938 0.18 -0.2
948,459 - 12306 mRNA_3938 0.27 -0.7
948,590 + 12306 mRNA_3938 0.35 0.3
948,766 + 12306 mRNA_3938 0.45 0.4
948,806 + 12306 mRNA_3938 0.48 0.2
949,187 + 12306 mRNA_3938 0.70 1.4
949,630 - 1.0
949,728 + -0.0
949,730 - 0.3
949,731 - -0.0
949,748 - 0.1
949,761 + 0.1
949,772 + 0.1
949,865 + 0.1
949,867 - 0.2
949,907 - 1.1
949,921 + -0.1
950,054 + 1.9
950,057 + 1.2
950,214 + 12307 mRNA_3939 0.11 0.8
950,345 - 12307 mRNA_3939 0.19 1.1