Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3912

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3911: 12279 - K18655 DDX19, DBP5 ATP-dependent RNA helicase DDX19/DBP5, at 878883 to 880998 12279 mRNA_3912: 12280 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 881146 to 884820 12280 mRNA_3913: 12281 - SUPERFAMILY--SSF48452, at 885030 to 886525 12281

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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881,039 + 0.6
881,041 + 0.9
881,041 + -1.2
881,050 + 0.8
881,061 + -0.1
881,068 + 0.2
881,192 - -0.0
881,195 + 0.6
881,226 + 0.7
881,507 + 0.1
881,508 - 0.7
881,627 - 12280 mRNA_3912 0.13 0.6
881,921 + 12280 mRNA_3912 0.21 1.4
882,077 - 12280 mRNA_3912 0.25 -0.8
883,041 - 12280 mRNA_3912 0.52 0.8
883,667 + 12280 mRNA_3912 0.69 0.5
884,371 - 12280 mRNA_3912 0.88 -0.1
884,406 - 12280 mRNA_3912 0.89 0.9
884,443 + 12280 mRNA_3912 0.90 -0.6
884,528 - 1.0
884,564 - 0.7
884,840 - -0.1
884,860 + 0.9
884,957 - 1.8
884,958 - 0.6