Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3898

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3897: 12265 - K00459 ncd2, npd nitronate monooxygenase, at 846105 to 847395 12265 mRNA_3898: 12266 - HMMPfam-Acetyltransferase (GNAT) domain-PF13508,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848183 to 849090 12266 mRNA_3899: 12267 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849422 to 850420 12267

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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847,323 - -0.1
847,603 - 1.1
847,605 + 0.7
847,617 + 0.3
847,745 - 0.5
847,751 - 0.4
847,756 - -0.1
847,756 + 1.0
847,763 - 0.8
847,769 + 0.4
847,772 + -0.9
847,777 - -0.2
847,787 + 0.2
847,791 + 0.7
847,803 - 1.8
847,825 + 0.6
847,831 - 2.6
847,886 + 0.4
847,905 - 1.2
847,917 - 0.6
847,931 - -0.3
847,933 + 1.7
847,984 - -0.4
848,091 - 1.0
848,310 - 12266 mRNA_3898 0.14 0.9
848,659 - 12266 mRNA_3898 0.52 0.8
848,821 + 12266 mRNA_3898 0.70 0.5
848,948 - 12266 mRNA_3898 0.84 0.7
849,792 - 12267 mRNA_3899 0.37 0.6