Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3889

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3888: 12256 - HMMPfam-GDSL-like Lipase/Acylhydrolase family-PF13472,SUPERFAMILY--SSF52266, at 829400 to 831173 12256 mRNA_3889: 12257 - K00587 ICMT, STE14 protein-S-isoprenylcysteine O-methyltransferase, at 831384 to 832562 12257 mRNA_3890: 12258 - HMMPfam-Pal1 cell morphology protein-PF08316, at 832975 to 835014 12258

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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830,790 + 12256 mRNA_3888 0.78 0.6
830,981 - 12256 mRNA_3888 0.89 0.7
831,093 - 0.0
831,164 + 0.3
831,224 + -0.1
831,232 - 0.1
831,232 - 1.2
831,239 + 0.3
831,242 - 0.8
831,246 + -0.3
831,251 - 0.5
831,254 - 0.5
831,260 - -0.8
831,261 + 1.1
831,263 + 0.1
831,264 + 0.8
831,276 + -0.4
831,288 + -0.4
831,293 - 0.2
831,300 - 0.7
831,314 - -1.1
831,316 - 0.6
831,320 - 0.4
831,351 - 1.1
831,354 - 0.6
831,365 - 1.0
831,435 - -1.3
831,614 - 12257 mRNA_3889 0.20 0.0
831,777 + 12257 mRNA_3889 0.33 0.4
831,855 + 12257 mRNA_3889 0.40 0.2
832,169 + 12257 mRNA_3889 0.67 2.4
832,174 - 12257 mRNA_3889 0.67 -0.7
832,205 + 12257 mRNA_3889 0.70 -1.2
832,208 + 12257 mRNA_3889 0.70 0.0
832,361 + 12257 mRNA_3889 0.83 1.2
832,362 + 12257 mRNA_3889 0.83 0.8
832,500 - 0.2
832,510 + 0.8
832,661 - 1.0
832,679 + 0.8
832,705 + 0.5
832,797 + 0.8
832,820 + -0.9
832,826 - -0.1
832,847 - 0.9
833,073 + 0.7
833,532 - 12258 mRNA_3890 0.27 1.4