Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3845

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723329 to 725612 12212 mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726085 to 727619 12213 mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728608 to 730842 12214

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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725,810 - 0.2
725,826 - -0.2
725,831 - 1.1
725,966 - 1.3
725,990 - 0.3
726,093 + 1.4
726,278 + 12213 mRNA_3845 0.13 -0.5
726,552 - 12213 mRNA_3845 0.30 0.7
726,565 - 12213 mRNA_3845 0.31 0.5
726,597 + 12213 mRNA_3845 0.33 0.7
726,987 + 12213 mRNA_3845 0.59 1.0
727,271 - 12213 mRNA_3845 0.77 1.0
727,403 + 12213 mRNA_3845 0.86 -0.1
727,558 + 0.5
727,698 + -0.2
727,699 - 0.9
727,711 + 0.1
727,712 - 0.6
727,827 + 0.7
727,842 + 0.4
727,992 - 1.3
728,001 + 0.2
728,007 + 0.0
728,022 - 1.8
728,030 + 1.0
728,260 + 0.2
728,278 - 0.2
728,279 - 0.0
728,282 + 0.1
728,287 - 0.9
728,299 - 0.2
728,308 + 0.4
728,314 + 1.2
728,432 - 0.5
728,436 - -0.5
728,437 + 1.3
728,466 + -0.9
728,590 - -0.3