Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3840

Experiments: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713356 to 714077 12207 mRNA_3840: 12208 - K18849 BMT2 25S rRNA (adenine2142-N1)-methyltransferase, at 714373 to 715825 12208 mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716088 to 718591 12209

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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713,424 - -0.1
713,568 + 12207 mRNA_3839 0.29 -0.8
713,577 - 12207 mRNA_3839 0.31 0.9
714,021 + 1.0
714,033 + -0.7
714,091 - 1.0
714,301 - 1.1
714,740 + 12208 mRNA_3840 0.25 0.3
715,003 + 12208 mRNA_3840 0.43 1.0
715,501 + 12208 mRNA_3840 0.78 1.0
715,760 + 0.4
715,913 + -0.8
715,918 + 0.9
716,620 - 12209 mRNA_3841 0.21 0.3
716,780 + 12209 mRNA_3841 0.28 -0.0